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Example genotype file: 'HSg5'

Geno_HSg5.Rd

Simulated genotype data for all* individuals in Pedigree Ped_HSg5 (*: with 40

Usage

data(Geno_HSg5)

Format

A genotype matrix with 920 rows (ids) and 200 columns (SNPs). Each SNP is coded as 0/1/2 copies of the reference allele, with -9 for missing values. Ids are stored as rownames.

See also

LH_HSg5, SimGeno, SeqOUT_HSg5

Author

Jisca Huisman, jisca.huisman@gmail.com

Examples

if (FALSE) {
# this output was created as follows:
Geno_HSg5 <- SimGeno(Ped = Ped_HSg5, nSnp = 200, ParMis=0.4,
                     CallRate = 0.9, SnpError = 0.005)
}