PARAM to FortPARAM

Convert list PARAM into a list with integer-only and double-only vectors, to be passed to Fortran.

Usage

MkFortParams(PARAM, fun = "main")

Arguments

PARAM

list with input parameters.

fun

function from which MkFortParams is called, determines which elements are included in the output list.

Value

A list with elements

Ng

Integer, number of individuals

SpecsInt

8 integers:

• nSnp

• MaxMismatchV; DUP - OH - ME

• MaxSibshipSize

• Complx, 0=mono, 1=simp, 2=full

• quiet, -1=verbose, 0=FALSE, 1=TRUE

• nAgeCl, nrow(AgePriors)

SpecsDbl

2 double precision numbers:

• Tfilter (< 0)

• Tassign (> 0)

ErrM

double, 3x3 matrix passed as length-9 vector

SpecsIntMkPed

fun='main' only

• MaxSibIter

• AgeEffect, 0=no, 1=yes, 2=extra

• CalcLLR, 0=FALSE, 1=TRUE

• Herm, 0=no, 1= dam/sire distinction, 2=no dam/sire distinction

SpecsIntAmb

fun='mayberel' only

• ParSib 1=par, 2=ped

• nAmbMax